Category

Best Accounting Software Integrations for 2025

May 5, 2025

If you’re like me, you’re living by your calendar and your task list. There’s no room for double entry, disjointed systems, or software that doesn’t talk to each other. In 2023, your accounting software needs to do more than just track numbers—it has to connect seamlessly with the tools you already use to run your business. Whether you’re processing payroll, managing inventory, or following up with customers, the right integrations can save you hours every week and prevent costly mistakes.

Let’s cut through the fluff and look at the most useful accounting software integrations of the year—based on real-life time savings, accuracy improvements, and workflow efficiency.


1. Stripe + QuickBooks Online

Best for: Automated payment reconciliation and cash flow clarity

Stripe is a favorite for online payments, and when paired with QuickBooks Online, it becomes a powerful combo. Once integrated, every Stripe transaction is automatically imported, categorized, and matched to your books. For business owners, this means less time chasing down invoices and more accurate monthly reporting.

Bookeyz Take:
I used to spend an hour each Friday matching Stripe payouts manually. Now, I barely think about it. It just works—and that peace of mind is priceless.


2. Gusto + Xero

Best for: Streamlined payroll and benefits tracking

Gusto handles payroll, benefits, and HR, and its integration with Xero makes tax time painless. It automatically syncs payroll entries into your accounting ledger, ensuring everything is aligned without manual input.

Bookeyz Take:
Running payroll used to be a mental roadblock for me. This integration turned a “dreaded task” into a 5-minute check-in. Plus, it helps avoid payroll tax errors, which can be expensive.


3. Shopify + QuickBooks Commerce

Best for: E-commerce inventory management and sales data sync

If you sell products online, syncing your Shopify store with QuickBooks Commerce is a game-changer. It pulls in orders, updates stock levels, and categorizes sales and taxes correctly. This helps you stay on top of your inventory and avoid surprises.

Bookeyz Take:
Before this integration, I didn’t trust my inventory reports. Now, I have full visibility without needing to jump into three different dashboards.


4. HubSpot + FreshBooks

Best for: Tracking time, converting quotes to invoices, and following up

This pairing is ideal for service-based businesses. HubSpot manages leads and customer interactions, and when it connects to FreshBooks, you can convert deals into invoices, track project hours, and stay on top of billing.

Bookeyz Take:
If your team logs time, sends estimates, and nurtures leads, this combo helps everything stay connected—and paid.


5. Zapier + Any Accounting Platform

Best for: Custom workflows and connecting everything else

Zapier is the secret weapon for connecting tools that don’t have native integrations. You can set up triggers like “When an invoice is paid in Xero, send a thank-you email” or “When a Google Sheet row is updated, add a transaction to QuickBooks.”

Bookeyz Take:
Zapier is like having a virtual assistant who works 24/7. Once you set it up, you’ll wonder how you ever lived without it.


Honorable Mentions

  • Square + Zoho Books: Great for small retail setups.

  • Expensify + Xero: Excellent for tracking employee expenses and reimbursing with ease.

  • Toggl + FreshBooks: Great for solo consultants tracking time by client.


Final Thoughts: Don’t Just Add Tools—Build a System

Software tools are only as good as the systems behind them. The right integration removes friction, improves accuracy, and gives you back your most valuable asset—time. Whether you’re leading a team or flying solo, these accounting integrations are worth exploring to make 2023 your most efficient year yet.

Every minute you spend manually importing data or fixing bookkeeping errors is a minute you’re not growing your business. Set your tech up right, and it’ll work for you—even when you’re not looking.

Scroll to Top